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Thermal fluctuations in amphipol A8-35 particles: a neutron scattering and molecular dynamics study

Journal Article


Abstract


  • Amphipols are a class of polymeric surfactants that can stabilize membrane proteins in aqueous solutions as compared to detergents. A8-35, the best-characterized amphipol to date, is composed of a polyacrylate backbone with 35 % of the carboxylates free, 25 % grafted with octyl side-chains, and 40 % with isopropyl ones. In aqueous solutions, A8-35 self-organizes into globular particles with a molecular mass of 40 kDa. The thermal dynamics of A8-35 particles was measured by neutron scattering in the 10-picosecond, 18-picosecond, and 1-nanosecond time-scales on natural abundance and deuterium-labeled molecules, which permitted to separate backbone and side-chain motions. A parallel analysis was performed on molecular dynamics trajectories (Perlmutter et al., Langmuir 27:10523–10537, 2011). Experimental results and simulations converge, from their respective time-scales, to show that A8-35 particles feature a more fluid hydrophobic core, predominantly containing the octyl chains, and a more rigid solvent-exposed surface, made up predominantly of the hydrophilic polymer backbone. The fluidity of the core is comparable to that of the lipid environment around proteins in the center of biological membranes, as also measured by neutron scattering. The biological activity of proteins depends sensitively on molecular dynamics, which itself is strongly dependent on the immediate macromolecular environment. In this context, the characterization of A8-35 particle dynamics constitutes a step toward understanding the effect of amphipols on membrane protein stability and function.

UOW Authors


  •   Tehei, Moeava
  •   Perlmutter, Jason (external author)
  •   Giusti, Fabrice (external author)
  •   Sachs, Jonathan N. (external author)
  •   Zaccai, Guiseppe (external author)
  •   Popot, Jean-Luc (external author)

Publication Date


  • 2014

Citation


  • Tehei, M., Perlmutter, J. D., Giusti, F., Sachs, J. N., Zaccai, G. & Popot, J. (2014). Thermal fluctuations in amphipol A8-35 particles: a neutron scattering and molecular dynamics study. Journal of Membrane Biology: an international journal for studies on the structure, function and genesis of biomembranes, 247 (9-10), 897-908.

Scopus Eid


  • 2-s2.0-84910124133

Ro Metadata Url


  • http://ro.uow.edu.au/eispapers/3821

Number Of Pages


  • 11

Start Page


  • 897

End Page


  • 908

Volume


  • 247

Issue


  • 9-10

Abstract


  • Amphipols are a class of polymeric surfactants that can stabilize membrane proteins in aqueous solutions as compared to detergents. A8-35, the best-characterized amphipol to date, is composed of a polyacrylate backbone with 35 % of the carboxylates free, 25 % grafted with octyl side-chains, and 40 % with isopropyl ones. In aqueous solutions, A8-35 self-organizes into globular particles with a molecular mass of 40 kDa. The thermal dynamics of A8-35 particles was measured by neutron scattering in the 10-picosecond, 18-picosecond, and 1-nanosecond time-scales on natural abundance and deuterium-labeled molecules, which permitted to separate backbone and side-chain motions. A parallel analysis was performed on molecular dynamics trajectories (Perlmutter et al., Langmuir 27:10523–10537, 2011). Experimental results and simulations converge, from their respective time-scales, to show that A8-35 particles feature a more fluid hydrophobic core, predominantly containing the octyl chains, and a more rigid solvent-exposed surface, made up predominantly of the hydrophilic polymer backbone. The fluidity of the core is comparable to that of the lipid environment around proteins in the center of biological membranes, as also measured by neutron scattering. The biological activity of proteins depends sensitively on molecular dynamics, which itself is strongly dependent on the immediate macromolecular environment. In this context, the characterization of A8-35 particle dynamics constitutes a step toward understanding the effect of amphipols on membrane protein stability and function.

UOW Authors


  •   Tehei, Moeava
  •   Perlmutter, Jason (external author)
  •   Giusti, Fabrice (external author)
  •   Sachs, Jonathan N. (external author)
  •   Zaccai, Guiseppe (external author)
  •   Popot, Jean-Luc (external author)

Publication Date


  • 2014

Citation


  • Tehei, M., Perlmutter, J. D., Giusti, F., Sachs, J. N., Zaccai, G. & Popot, J. (2014). Thermal fluctuations in amphipol A8-35 particles: a neutron scattering and molecular dynamics study. Journal of Membrane Biology: an international journal for studies on the structure, function and genesis of biomembranes, 247 (9-10), 897-908.

Scopus Eid


  • 2-s2.0-84910124133

Ro Metadata Url


  • http://ro.uow.edu.au/eispapers/3821

Number Of Pages


  • 11

Start Page


  • 897

End Page


  • 908

Volume


  • 247

Issue


  • 9-10