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Hierarchical anatomical brain networks for MCI prediction: Revisiting volumetric measures

Journal Article


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Abstract


  • Owning to its clinical accessibility, T1-weighted MRI (Magnetic Resonance Imaging) has been extensively studied in the past decades for prediction of Alzheimer's disease (AD) and mild cognitive impairment (MCI). The volumes of gray matter (GM), white matter (WM) and cerebrospinal fluid (CSF) are the most commonly used measurements, resulting in many successful applications. It has been widely observed that disease-induced structural changes may not occur at isolated spots, but in several inter-related regions. Therefore, for better characterization of brain pathology, we propose in this paper a means to extract inter-regional correlation based features from local volumetric measurements. Specifically, our approach involves constructing an anatomical brain network for each subject, with each node representing a Region of Interest (ROI) and each edge representing Pearson correlation of tissue volumetric measurements between ROI pairs. As second order volumetric measurements, network features are more descriptive but also more sensitive to noise. To overcome this limitation, a hierarchy of ROIs is used to suppress noise at different scales. Pairwise interactions are considered not only for ROIs with the same scale in the same layer of the hierarchy, but also for ROIs across different scales in different layers. To address the high dimensionality problem resulting from the large number of network features, a supervised dimensionality reduction method is further employed to embed a selected subset of features into a low dimensional feature space, while at the same time preserving discriminative information. We demonstrate with experimental results the efficacy of this embedding strategy in comparison with some other commonly used approaches. In addition, although the proposed method can be easily generalized to incorporate other metrics of regional similarities, the benefits of using Pearson correlation in our application are reinforced by the experimental results. Without requiring new sources of information, our proposed approach improves the accuracy of MCI prediction from 80.83% (of conventional volumetric features) to 84.35% (of hierarchical network features), evaluated using data sets randomly drawn from the ADNI (Alzheimer's Disease Neuroimaging Initiative) dataset.

Authors


  •   Zhou, Luping
  •   Wang, Yaping (external author)
  •   Li, Yang (external author)
  •   Yap, Pew-Thian (external author)
  •   Shen, Dinggang (external author)

Publication Date


  • 2011

Citation


  • Zhou, L., Wang, Y., Li, Y., Yap, P. & Shen, D. (2011). Hierarchical anatomical brain networks for MCI prediction: Revisiting volumetric measures. PLoS One, 6 (7), 1-14.

Scopus Eid


  • 2-s2.0-79960471063

Ro Full-text Url


  • http://ro.uow.edu.au/cgi/viewcontent.cgi?article=2786&context=eispapers

Ro Metadata Url


  • http://ro.uow.edu.au/eispapers/1777

Has Global Citation Frequency


Number Of Pages


  • 13

Start Page


  • 1

End Page


  • 14

Volume


  • 6

Issue


  • 7

Place Of Publication


  • United States

Abstract


  • Owning to its clinical accessibility, T1-weighted MRI (Magnetic Resonance Imaging) has been extensively studied in the past decades for prediction of Alzheimer's disease (AD) and mild cognitive impairment (MCI). The volumes of gray matter (GM), white matter (WM) and cerebrospinal fluid (CSF) are the most commonly used measurements, resulting in many successful applications. It has been widely observed that disease-induced structural changes may not occur at isolated spots, but in several inter-related regions. Therefore, for better characterization of brain pathology, we propose in this paper a means to extract inter-regional correlation based features from local volumetric measurements. Specifically, our approach involves constructing an anatomical brain network for each subject, with each node representing a Region of Interest (ROI) and each edge representing Pearson correlation of tissue volumetric measurements between ROI pairs. As second order volumetric measurements, network features are more descriptive but also more sensitive to noise. To overcome this limitation, a hierarchy of ROIs is used to suppress noise at different scales. Pairwise interactions are considered not only for ROIs with the same scale in the same layer of the hierarchy, but also for ROIs across different scales in different layers. To address the high dimensionality problem resulting from the large number of network features, a supervised dimensionality reduction method is further employed to embed a selected subset of features into a low dimensional feature space, while at the same time preserving discriminative information. We demonstrate with experimental results the efficacy of this embedding strategy in comparison with some other commonly used approaches. In addition, although the proposed method can be easily generalized to incorporate other metrics of regional similarities, the benefits of using Pearson correlation in our application are reinforced by the experimental results. Without requiring new sources of information, our proposed approach improves the accuracy of MCI prediction from 80.83% (of conventional volumetric features) to 84.35% (of hierarchical network features), evaluated using data sets randomly drawn from the ADNI (Alzheimer's Disease Neuroimaging Initiative) dataset.

Authors


  •   Zhou, Luping
  •   Wang, Yaping (external author)
  •   Li, Yang (external author)
  •   Yap, Pew-Thian (external author)
  •   Shen, Dinggang (external author)

Publication Date


  • 2011

Citation


  • Zhou, L., Wang, Y., Li, Y., Yap, P. & Shen, D. (2011). Hierarchical anatomical brain networks for MCI prediction: Revisiting volumetric measures. PLoS One, 6 (7), 1-14.

Scopus Eid


  • 2-s2.0-79960471063

Ro Full-text Url


  • http://ro.uow.edu.au/cgi/viewcontent.cgi?article=2786&context=eispapers

Ro Metadata Url


  • http://ro.uow.edu.au/eispapers/1777

Has Global Citation Frequency


Number Of Pages


  • 13

Start Page


  • 1

End Page


  • 14

Volume


  • 6

Issue


  • 7

Place Of Publication


  • United States