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Modelling peptide nanotubes for artificial ion channels

Journal Article


Abstract


  • We investigate the van der Waals interaction of D,L-Ala cyclopeptide nanotubes and various ions, ion–water clusters and C60 fullerenes, using the Lennard-Jones potential and a continuum approach which assumes that the atoms are smeared over the peptide nanotube providing an average atomic density. Our results predict that Li + , Na + , Rb + and Cl − ions and ion–water clusters are accepted into peptide nanotubes of 8.5 Å internal diameter whereas the C60 molecule is rejected. The model indicates that the C60 molecule is accepted into peptide nanotubes of 13 Å internal diameter, suggesting that the interaction energy depends on the size of the molecule and the internal diameter of the peptide nanotube. This result may be useful for the design of peptide nanotubes for drug delivery applications. Further, we also find that the ions prefer a position inside the peptide ring where the energy is minimum. In contrast, Li + –water clusters prefer to be in the space between each peptide ring.

Authors


Publication Date


  • 2011

Citation


  • Rahmat, F., Thamwattana, N. & Cox, B. J. (2011). Modelling peptide nanotubes for artificial ion channels. Nanotechnology, 22 (44), 1-8.

Scopus Eid


  • 2-s2.0-80054903673

Ro Metadata Url


  • http://ro.uow.edu.au/infopapers/1525

Has Global Citation Frequency


Number Of Pages


  • 7

Start Page


  • 1

End Page


  • 8

Volume


  • 22

Issue


  • 44

Place Of Publication


  • United Kingdom

Abstract


  • We investigate the van der Waals interaction of D,L-Ala cyclopeptide nanotubes and various ions, ion–water clusters and C60 fullerenes, using the Lennard-Jones potential and a continuum approach which assumes that the atoms are smeared over the peptide nanotube providing an average atomic density. Our results predict that Li + , Na + , Rb + and Cl − ions and ion–water clusters are accepted into peptide nanotubes of 8.5 Å internal diameter whereas the C60 molecule is rejected. The model indicates that the C60 molecule is accepted into peptide nanotubes of 13 Å internal diameter, suggesting that the interaction energy depends on the size of the molecule and the internal diameter of the peptide nanotube. This result may be useful for the design of peptide nanotubes for drug delivery applications. Further, we also find that the ions prefer a position inside the peptide ring where the energy is minimum. In contrast, Li + –water clusters prefer to be in the space between each peptide ring.

Authors


Publication Date


  • 2011

Citation


  • Rahmat, F., Thamwattana, N. & Cox, B. J. (2011). Modelling peptide nanotubes for artificial ion channels. Nanotechnology, 22 (44), 1-8.

Scopus Eid


  • 2-s2.0-80054903673

Ro Metadata Url


  • http://ro.uow.edu.au/infopapers/1525

Has Global Citation Frequency


Number Of Pages


  • 7

Start Page


  • 1

End Page


  • 8

Volume


  • 22

Issue


  • 44

Place Of Publication


  • United Kingdom