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Determining the Genetic Architecture of Reproductive Stage Drought Tolerance in Wheat Using a Correlated Trait and Correlated Marker Effect Model

Journal Article


Abstract


  • Water stress during reproductive growth is a major yield constraint for wheat (Triticum aestivum L). We previously established a controlled environment drought tolerance phenotyping method targeting the young microspore stage of pollen development. This method eliminates stress avoidance based on flowering time. We substituted soil drought treatments by a reproducible osmotic stress treatment using hydroponics and NaCl as osmolyte. Salt exclusion in hexaploid wheat avoids salt toxicity, causing osmotic stress. A Cranbrook x Halberd doubled haploid (DH) population was phenotyped by scoring spike grain numbers of unstressed (SGNCon) and osmotically stressed (SGNTrt) plants. Grain number data were analyzed using a linear mixed model (LMM) that included genetic correlations between the SGNCon and SGNTrt traits. Viewing this as a genetic regression of SGNTrt on SGNCon allowed derivation of a stress tolerance trait (SGNTol). Importantly, and by definition of the trait, the genetic effects for SGNTol are statistically independent of those for SGNCon. Thus they represent non-pleiotropic effects associated with the stress treatment that are independent of the control treatment. QTL mapping was conducted using a whole genome approach in which the LMM included all traits and all markers simultaneously. The marker effects within chromosomes were assumed to follow a spatial correlation model. This resulted in smooth marker profiles that could be used to identify positions of putative QTL. The most influential QTL were located on chromosome 5A for SGNTol (126cM; contributed by Halberd), 5A for SGNCon (141cM; Cranbrook) and 2A for SGNTrt (116cM; Cranbrook). Sensitive and tolerant population tail lines all showed matching soil drought tolerance phenotypes, confirming that osmotic stress is a valid surrogate screening method.

Authors


  •   Dolferus, Rudy (external author)
  •   Thavamanikumar, Saravanan (external author)
  •   Sangma, Harriet (external author)
  •   Kleven, Sue (external author)
  •   Wallace, Xiaomei (external author)
  •   Forrest, Kerrie (external author)
  •   Rebetzke, Greg J. (external author)
  •   Hayden, Matthew (external author)
  •   Borg, Lauren
  •   Smith, Alison B.
  •   Cullis, Brian R.

Publication Date


  • 2019

Citation


  • Dolferus, R., Thavamanikumar, S., Sangma, H., Kleven, S., Wallace, X., Forrest, K., Rebetzke, G., Hayden, M., Borg, L., Smith, A. & Cullis, B. (2019). Determining the Genetic Architecture of Reproductive Stage Drought Tolerance in Wheat Using a Correlated Trait and Correlated Marker Effect Model. G3: Genes, Genomes, Genetics, 9 (2), 473-489.

Scopus Eid


  • 2-s2.0-85061270395

Number Of Pages


  • 16

Start Page


  • 473

End Page


  • 489

Volume


  • 9

Issue


  • 2

Place Of Publication


  • United States

Abstract


  • Water stress during reproductive growth is a major yield constraint for wheat (Triticum aestivum L). We previously established a controlled environment drought tolerance phenotyping method targeting the young microspore stage of pollen development. This method eliminates stress avoidance based on flowering time. We substituted soil drought treatments by a reproducible osmotic stress treatment using hydroponics and NaCl as osmolyte. Salt exclusion in hexaploid wheat avoids salt toxicity, causing osmotic stress. A Cranbrook x Halberd doubled haploid (DH) population was phenotyped by scoring spike grain numbers of unstressed (SGNCon) and osmotically stressed (SGNTrt) plants. Grain number data were analyzed using a linear mixed model (LMM) that included genetic correlations between the SGNCon and SGNTrt traits. Viewing this as a genetic regression of SGNTrt on SGNCon allowed derivation of a stress tolerance trait (SGNTol). Importantly, and by definition of the trait, the genetic effects for SGNTol are statistically independent of those for SGNCon. Thus they represent non-pleiotropic effects associated with the stress treatment that are independent of the control treatment. QTL mapping was conducted using a whole genome approach in which the LMM included all traits and all markers simultaneously. The marker effects within chromosomes were assumed to follow a spatial correlation model. This resulted in smooth marker profiles that could be used to identify positions of putative QTL. The most influential QTL were located on chromosome 5A for SGNTol (126cM; contributed by Halberd), 5A for SGNCon (141cM; Cranbrook) and 2A for SGNTrt (116cM; Cranbrook). Sensitive and tolerant population tail lines all showed matching soil drought tolerance phenotypes, confirming that osmotic stress is a valid surrogate screening method.

Authors


  •   Dolferus, Rudy (external author)
  •   Thavamanikumar, Saravanan (external author)
  •   Sangma, Harriet (external author)
  •   Kleven, Sue (external author)
  •   Wallace, Xiaomei (external author)
  •   Forrest, Kerrie (external author)
  •   Rebetzke, Greg J. (external author)
  •   Hayden, Matthew (external author)
  •   Borg, Lauren
  •   Smith, Alison B.
  •   Cullis, Brian R.

Publication Date


  • 2019

Citation


  • Dolferus, R., Thavamanikumar, S., Sangma, H., Kleven, S., Wallace, X., Forrest, K., Rebetzke, G., Hayden, M., Borg, L., Smith, A. & Cullis, B. (2019). Determining the Genetic Architecture of Reproductive Stage Drought Tolerance in Wheat Using a Correlated Trait and Correlated Marker Effect Model. G3: Genes, Genomes, Genetics, 9 (2), 473-489.

Scopus Eid


  • 2-s2.0-85061270395

Number Of Pages


  • 16

Start Page


  • 473

End Page


  • 489

Volume


  • 9

Issue


  • 2

Place Of Publication


  • United States