A peculiar nanostructure consisting of nitrogen-doped, carbon-encapsulated (N–C) SnO2@Sn nanoparticles grafted on three-dimensional (3D) graphene-like networks (designated as N–C@SnO2@Sn/3D-GNs) has been fabricated via a low-cost and scalable method, namely an in situ hydrolysis of Sn salts and immobilization of SnO2 nanoparticles on the surface of 3D-GNs, followed by an in situ polymerization of dopamine on the surface of the SnO2/3D-GNs, and finally a carbonization. In the composites, three-layer core–shell N–C@SnO2@Sn nanoparticles were uniformly grafted onto the surfaces of 3D-GNs, which promotes highly efficient insertion/extraction of Li+. In addition, the outermost N–C layer with graphene-like structure of the N–C@SnO2@Sn nanoparticles can effectively buffer the large volume changes, enhance electronic conductivity, and prevent SnO2/Sn aggregation and pulverization during discharge/charge. The middle SnO2 layer can be changed into active Sn and nano-Li2O during discharge, as described by SnO2 + Li+ → Sn + Li2O, whereas the thus-formed nano-Li2O can provide a facile environment for the alloying process and facilitate good cycling behavior, so as to further improve the cycling performance of the composite. The inner Sn layer with large theoretical capacity can guarantee high lithium storage in the composite. The 3D-GNs, with high electrical conductivity (1.50 × 103 S m–1), large surface area (1143 m2 g–1), and high mechanical flexibility, tightly pin the core–shell structure of the N–C@SnO2@Sn nanoparticles and thus lead to remarkably enhanced electrical conductivity and structural integrity of the overall electrode. Consequently, this novel hybrid anode exhibits highly stable capacity of up to 901 mAh g–1, with ∼89.3% capacity retention after 200 cycles at 0.1 A g–1 and superior high rate performance, as well as a long lifetime of 500 cycles with 84.0% retention at 1.0 A g–1. Importantly, this unique hybrid design is expected to be extended to other alloy-type anode materials such as silicon, germanium, etc.