Thind, Amarinder

Top Publications

Year	Title
2022	Whole genome analysis reveals the genomic complexity in metastatic cutaneous squamous cell carcinoma Published in Frontiers in Oncology
2021	Demystifying emerging bulk RNA-Seq applications: the application and utility of bioinformatic methodology Published in Briefings in bioinformatics
2019	From trash to treasure: Detecting unexpected contamination in unmapped NGS data Published in BMC Bioinformatics
2019	RankerGUI: A computational framework to compare differential gene expression profiles using rank based statistics Published in International Journal of Molecular Sciences

Research Areas

Research Overview

I am a PostDoctoral at the University of Wollongong, Australia, and also associated with the Sydney Precision Bioinformatics Alliance (University of Sydney).

Member Of

Illawarra Health and Medical Research Institute (IHMRI) Research Fellow 2020 -
Sydney Precision Bioinformatics Alliance (SPBA) 2020 -

Selected Publications

Journal Article

Year	Title
2022	Cancer Progression Gene Expression Profiling Identifies the Urokinase Plasminogen Activator Receptor as a Biomarker of Metastasis in Cutaneous Squamous Cell Carcinoma Published In Frontiers in Oncology
2022	Whole genome analysis reveals the genomic complexity in metastatic cutaneous squamous cell carcinoma Published In Frontiers in Oncology
2021	Demystifying emerging bulk RNA-Seq applications: the application and utility of bioinformatic methodology Published In Briefings in bioinformatics
2020	Comprehensive mutational and phenotypic characterization of new metastatic cutaneous squamous cell carcinoma cell lines reveal novel drug susceptibilities Published In International Journal of Molecular Sciences
2020	What's Genetic Variation Got to Do with It? Starvation-Induced Self-Fertilization Enhances Survival in Paramecium Published In Genome Biology and Evolution
2019	From trash to treasure: Detecting unexpected contamination in unmapped NGS data Published In BMC Bioinformatics
2019	RankerGUI: A computational framework to compare differential gene expression profiles using rank based statistics Published In International Journal of Molecular Sciences
2017	Dissection of factors affecting the variability of the peptide bond geometry and planarity Published In BioMed Research International

2008	Revision of genus Arge SCHRANK from India (Hymenoptera, Symphyta, Argidae) Published In Deutsche Entomologische Zeitschrift

Chapter

Year	Title
2022	An Overview of Databases and Tools for lncRNA Genomics Advancing Precision Medicine Published In Machine Learning and Systems Biology in Genomics and Health Publisher : Springer Nature
2022	An Overview of Databases and Tools for lncRNA Genomics Advancing Precision Medicine Published In Machine Learning and Systems Biology in Genomics and Health Publisher : Springer Nature Singapore
2022	An Overview of Databases and Tools for lncRNA Genomics Advancing Precision Medicine Published In Machine Learning and Systems Biology in Genomics and Health Publisher : Springer Singapore

Conference Paper

Year	Title
2021	Inhibition of focal adhesion kinase in cutaneous squamous cell carcinoma Published In ASIA-PACIFIC JOURNAL OF CLINICAL ONCOLOGY
2021	Non-coding and coding genomic mutational drivers of metastatic cutaneous squamous cell carcinoma Published In ASIA-PACIFIC JOURNAL OF CLINICAL ONCOLOGY
2021	Targeting the PI3K/AKT/mTOR pathway in cutaneous squamous cell carcinoma Published In ASIA-PACIFIC JOURNAL OF CLINICAL ONCOLOGY
2021	The role of urokinase plasminogen activator receptor in HNcSCC progression and metastasis Published In ASIA-PACIFIC JOURNAL OF CLINICAL ONCOLOGY

Teaching Activities

Bulk and Single Cell RNA sequencing Analysis Delivered sessions 2022

Reviewer Of

frontier in Genetics (Editorial Article) 2021 -

Awards And Honors

Marie Skłodowska-Curie Fellowship for 3 years PhD program, conferred by European Commission, 2016
First division with distinction, conferred by University of Hyderabad, India, 2014
Graduate Aptitude Test in Engineering (GATE), conferred by The Department of Higher Education, Ministry of Education (MoE), Government of India, 2012
Merit-Cum mean fellowship , conferred by Ministry of Minority Affairs (MOMA), India
National Network for Mathematical and Computational Biology (NNMCB) Fellowship , conferred by The Science and Engineering Research Board, Government of India
Matriculation Examination Merit Scholarship , conferred by Punjab school education board (PSEB), Punjab, India
Best publication of the month award at IHMRI, conferred by Illawarra Health and Medical Research Institute (IHMRI)
Biotech Industrial Training Programme fellowship, conferred by Department of Biotechnology (DBT), Govt. of India

Full Name

Amarinder Singh Thind

Orcid Id

http://orcid.org/0000-0003-4592-0380 (confirmed)

Top Publications

Year	Title
2022	Whole genome analysis reveals the genomic complexity in metastatic cutaneous squamous cell carcinoma Published in Frontiers in Oncology
2021	Demystifying emerging bulk RNA-Seq applications: the application and utility of bioinformatic methodology Published in Briefings in bioinformatics
2019	From trash to treasure: Detecting unexpected contamination in unmapped NGS data Published in BMC Bioinformatics
2019	RankerGUI: A computational framework to compare differential gene expression profiles using rank based statistics Published in International Journal of Molecular Sciences

Research Areas

Research Overview

I am a PostDoctoral at the University of Wollongong, Australia, and also associated with the Sydney Precision Bioinformatics Alliance (University of Sydney).

Member Of

Illawarra Health and Medical Research Institute (IHMRI) Research Fellow 2020 -
Sydney Precision Bioinformatics Alliance (SPBA) 2020 -

Selected Publications

Journal Article

Year	Title
2022	Cancer Progression Gene Expression Profiling Identifies the Urokinase Plasminogen Activator Receptor as a Biomarker of Metastasis in Cutaneous Squamous Cell Carcinoma Published In Frontiers in Oncology
2022	Whole genome analysis reveals the genomic complexity in metastatic cutaneous squamous cell carcinoma Published In Frontiers in Oncology
2021	Demystifying emerging bulk RNA-Seq applications: the application and utility of bioinformatic methodology Published In Briefings in bioinformatics
2020	Comprehensive mutational and phenotypic characterization of new metastatic cutaneous squamous cell carcinoma cell lines reveal novel drug susceptibilities Published In International Journal of Molecular Sciences
2020	What's Genetic Variation Got to Do with It? Starvation-Induced Self-Fertilization Enhances Survival in Paramecium Published In Genome Biology and Evolution
2019	From trash to treasure: Detecting unexpected contamination in unmapped NGS data Published In BMC Bioinformatics
2019	RankerGUI: A computational framework to compare differential gene expression profiles using rank based statistics Published In International Journal of Molecular Sciences
2017	Dissection of factors affecting the variability of the peptide bond geometry and planarity Published In BioMed Research International

2008	Revision of genus Arge SCHRANK from India (Hymenoptera, Symphyta, Argidae) Published In Deutsche Entomologische Zeitschrift

Chapter

Year	Title
2022	An Overview of Databases and Tools for lncRNA Genomics Advancing Precision Medicine Published In Machine Learning and Systems Biology in Genomics and Health Publisher : Springer Nature
2022	An Overview of Databases and Tools for lncRNA Genomics Advancing Precision Medicine Published In Machine Learning and Systems Biology in Genomics and Health Publisher : Springer Nature Singapore
2022	An Overview of Databases and Tools for lncRNA Genomics Advancing Precision Medicine Published In Machine Learning and Systems Biology in Genomics and Health Publisher : Springer Singapore

Conference Paper

Year	Title
2021	Inhibition of focal adhesion kinase in cutaneous squamous cell carcinoma Published In ASIA-PACIFIC JOURNAL OF CLINICAL ONCOLOGY
2021	Non-coding and coding genomic mutational drivers of metastatic cutaneous squamous cell carcinoma Published In ASIA-PACIFIC JOURNAL OF CLINICAL ONCOLOGY
2021	Targeting the PI3K/AKT/mTOR pathway in cutaneous squamous cell carcinoma Published In ASIA-PACIFIC JOURNAL OF CLINICAL ONCOLOGY
2021	The role of urokinase plasminogen activator receptor in HNcSCC progression and metastasis Published In ASIA-PACIFIC JOURNAL OF CLINICAL ONCOLOGY

Teaching Activities

Bulk and Single Cell RNA sequencing Analysis Delivered sessions 2022

Reviewer Of

frontier in Genetics (Editorial Article) 2021 -

Awards And Honors

Marie Skłodowska-Curie Fellowship for 3 years PhD program, conferred by European Commission, 2016
First division with distinction, conferred by University of Hyderabad, India, 2014
Graduate Aptitude Test in Engineering (GATE), conferred by The Department of Higher Education, Ministry of Education (MoE), Government of India, 2012
Merit-Cum mean fellowship , conferred by Ministry of Minority Affairs (MOMA), India
National Network for Mathematical and Computational Biology (NNMCB) Fellowship , conferred by The Science and Engineering Research Board, Government of India
Matriculation Examination Merit Scholarship , conferred by Punjab school education board (PSEB), Punjab, India
Best publication of the month award at IHMRI, conferred by Illawarra Health and Medical Research Institute (IHMRI)
Biotech Industrial Training Programme fellowship, conferred by Department of Biotechnology (DBT), Govt. of India

Full Name

Amarinder Singh Thind

Orcid Id

http://orcid.org/0000-0003-4592-0380 (confirmed)

Overview

Top Publications

Research Areas

Research Overview

Affiliation

Member Of

Publications

Selected Publications

Journal Article

Chapter

Conference Paper

Supervision

Teaching Activities

Service

Reviewer Of

Background

Awards And Honors

Contact

Full Name

Identity

Orcid Id

Overview

Top Publications

Research Areas

Research Overview

Affiliation

Member Of

Publications

Selected Publications

Journal Article

Chapter

Conference Paper

Supervision

Teaching Activities

Service

Reviewer Of

Background

Awards And Honors

Contact

Full Name

Identity

Orcid Id

Visualisations

Research Areas